Table 2 Strains of Japanese encephalitis virus used in this study
Strain | Genotype | Year | Country and region | Source | GenBank accession No. | |
|---|---|---|---|---|---|---|
E gene | Complete gene | |||||
SXYC1523* | I | 2015 | Shanxi,China | Culex pipiens | KY078829 | KY078829 |
SXYC1546* | I | 2015 | Shanxi,China | C. tritaeniorhynchus | KY078827 | Â |
SXYC1548* | I | 2015 | Shanxi,China | C. tritaeniorhynchus | KY078828 | Â |
Ishikawa | I | 1994 | Ishikawa, Japan | Swine mononuclear cells | AB051292 | AB051292 |
JEV/sw/Mie/40/2004 | I | 2004 | Japan | Pig serum | AB241118 | AB241118 |
12-YJ033 | I | 2012 | Shanxi,China | C. tritaeniorhynchus | KP216590 | Â |
SX09S-01 | I | 2008 | Shanxi,China | Pig brain | HQ893545 | HQ893545 |
12-LY039 | I | 2012 | Shanxi,China | C. pipiens | KP216598 | Â |
12-YJ022 | I | 2012 | Shanxi,China | C. tritaeniorhynchus | KP216587 | Â |
XJ69 | I | 2007 | China | C. pipiens pallens | EU880214 | EU880214 |
SH03-130 | I | 2003 | Shanghai, China | C. tritaeniorhynchus | DQ404104 | Â |
KV1899 | I | 1999 | Korea | Pig serum | AY316157 | AY316357 |
YN79-Bao83 | I | 1979 | Yunan, China | C. tritaeniorhynchus | DQ404128 | Â |
YN-Xiang JE | I | IU | Yunan, China | Human blood | DQ404135 | Â |
LN02-102 | I | 2002 | Liaoning, China | C. modestus | DQ404085 | Â |
SH03-105 | I | 2003 | Shanghai, China | C. tritaeniorhynchus | DQ404097 | Â |
HN06-21 | I | 2006 | Henan, China | Culex | JN381830 | Â |
HN06-26 | I | 2006 | Henan, China | Culex | JN381837 | Â |
SC04-12 | I | 2004 | Sichuan, China | Culex | DQ404090 | Â |
GZ56 | I | 2008 | Guizhou, China | Cerebrospinal fluid | HM366552 | HM366552 |
JEV/sw/Mie/41/2002 | I | 2002 | Mie, Japan | Swine serum | AB241119 | AB241119 |
K94P05 | I | 1994 | South Korea | C. tritaeniorhynchus | AF045551 | AF045551 |
XJP613 | I | 2007 | China | C. tritaeniorhynchus | EU693899 | EU693899 |
FU | II | 1995 | Australia | Human sreum | AF217620 | AF217620 |
SA14 | III | 1954 | China | Mosquito | U14163 | U14163 |
SA14-14-2 | III | IU | China | Vaccine | AF315119 | AF315119 |
P3 | III | 1949 | Beijing, China | Human brain | U47032 | U47032 |
Nakayama-RFVL | III | 1935 | Nakayama, Japan | Human brain | S75726 | Â |
GZ04-36 | III | 2004 | Guizhou, China | Culex | DQ404112 | Â |
HLJ02-134 | III | 2002 | Heilongjiang, China | Culicoides | DQ404081 | Â |
FJ03-31 | III | 2003 | Fujian, China | Human blood | DQ404117 | Â |
SH0601 | III | 2006 | Shanghai, China | Pig | EF543861 | EF543861 |
K87P39 | III | 1987 | Korea | Mosquito | AY585242 | AY585242 |
JaGAr01 | III | 1959 | Japan,Gunma | C. tritaeniorhynchus | AF039076 | AF039076 |
RP-9 | III | 1985 | Taiwan,China | Mosquito | AF14161 | AF14161 |
T1P1 | III | 1997 | Taiwan,China | Armigeres subalbatus | AF254453 | AF254453 |
Beijing-1 | III | 1949 | Beijing, China | Human brain | L48961 | L48961 |
Ling | III | 1965 | Taiwan,China | Mosquito | L78128 | L78128 |
P20778 | III | 1958 | India | Human brain | AF080251 | AF08251 |
JKT6468 | IV | 1981 | Indonesia,Flores | C. tritaeniorhynchus | AY184212 | AY184212 |
Muar | V | 1952 | Malaysia | Human brain | HM596272 | HM596272 |
XZ0934 | V | 2009 | China | Mosquito | JF915894 | JF915894 |
MVE | Â | 1951 | Australia | Human brain | NC_000943 | NC_000943 |