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Table 1 Summary of the insect-specific flaviviruses detected from different mosquito pools, captured in Shanghai, during June to October in 2016

From: Co-circulation of Aedes flavivirus, Culex flavivirus, and Quang Binh virus in Shanghai, China

Strain Virus Host Collection date Geographic location Survey site type GenBank ID
NS5 E
SB5_16–6-S-B-2-JG-3 AeFV Aedes albopictus 14-Jun-2016 Songjiang District Office workspace MG602480  
SC6_16–6-S-B-4-JM-4 AeFV Ae. albopictus 16-Jun-2016 Songjiang District Suburban residential area MG602481  
SA1_16–6-S-B-1-JM-1 AeFV Ae. albopictus 14-Jun-2016 Songjiang District Suburban residential area MG602482  
SC3_16–6-S-B-4-JM-1 AeFV Ae. albopictus 16-Jun-2016 Songjiang District Suburban residential area MG602483  
SA7_16–6-S-B-1-XX-3 AeFV Ae. albopictus 14-Jun-2016 Songjiang District School MG602484  
SB4_16–6-S-B-2-JG-2 AeFV Ae. albopictus 14-Jun-2016 Songjiang District Office workspace MG602485  
SB3_16–6-S-B-2-JG-1 AeFV Ae. albopictus 14-Jun-2016 Songjiang District Office workspace MG602486  
SA3_16–6-S-B-1-JM-3 AeFV Ae. albopictus 14-Jun-2016 Songjiang District Suburban residential area MG602487  
SC7_16–6-S-B-4-GY-1 AeFV Ae. albopictus 16-Jun-2016 Songjiang District Public garden MG602488  
HL7_9-H-B-3-JM-3 AeFV Ae. albopictus 22-Sep-2016 Huangpu District Suburban residential area MG602503  
QH8_8-Q-B-1-JM-1 AeFV Ae. albopictus 8-Aug-2016 Qingpu District Suburban residential area MG602504  
CG8_16–7-C-Cxp-R-6-1 CxFV Culex pipiens 6-Jul-2016 Chongming District Suburban residential area MG602489  
PJ7_16–10-P-Cxp-C-4-5 CxFV Cx. pipiens 11-Oct-2016 Pudong New Area Livestock farm MG602490  
PJ4_16–10-P-Cxp-C-2-15 CxFV Cx. pipiens 24-Oct-2016 Pudong New Area Suburban residential area MG602491 MG673529
PK2_16–10-P-Cxp-C-4-2 CxFV Cx. pipiens 2-Oct-2016 Pudong New Area Livestock farm MG602492 MG673530
HK8_16–10-H-Cxp-C-1-3 CxFV Cx. pipiens 12-Oct-2016 Huangpu District Urban residential area MG602493  
PG7_16–8 L-P-Cxp-C-2-21 CxFV Cx. pipiens 22-Aug-2016 Pudong New Area Suburban residential area MG602494 MG673527
PF1_16–7 M-P-Cxp-C-2-27 CxFV Cx. pipiens 12-Jul-2016 Pudong New Area Suburban residential area MG602495 MG673526
HK7_16–10-H-Cxp-C-1-1 CxFV Cx. pipiens 2-Oct-2016 Huangpu District Urban residential area MG602496  
PJ3_10-P-Cxp-C-2-8 CxFV Cx. pipiens 12-Oct-2016 Pudong New Area Suburban residential area MG602497 MG673528
CB8_16–8-C-Cxt-C-3-1 QBV Cx. tritaeniorhynchus 12-Aug-2016 Chongming District Rural residential area MG602498  
CC2_16–8-C-Cxt-C-5-5 QBV Cx. tritaeniorhynchus 12-Aug-2016 Chongming District Livestock farm MG602499  
CC1_16–8-C-Cxt-C-5-3 QBV Cx. tritaeniorhynchus 12-Aug-2016 Chongming District Livestock farm MG602500  
CD8_16–9-C-Cxt-R-2-1 QBV Cx. tritaeniorhynchus 3-Sep-2016 Chongming District Rural residential area MG602501  
CI5_16–7-C-Cxt-R-4-4 QBV Cx. tritaeniorhynchus 25-Jul-2016 Chongming District Livestock farm MG602502  
ZB3_16–7-CZ-Cxt-L-N-B3 QBV Cx. tritaeniorhynchus 20-Jul-2016 Chongming District Conservation area MG673531  
ZG2_16–8-CZ-Cxt-L-G-G2 QBV Cx. tritaeniorhynchus 26-Aug-2016 Chongming District Conservation area MG673532  
ZG5_16–8-CZ-Cxt-L-G-G5 QBV Cx. tritaeniorhynchus 26-Aug-2016 Chongming District Conservation area MG673533  
ZI7_16–8-CZ-Cxt-L-R-I7 QBV Cx. tritaeniorhynchus 26-Aug-2016 Chongming District Conservation area MG673534  
ZG4_16–8-CZ-Cxt-L-G-G4 QBV Cx. tritaeniorhynchus 26-Aug-2016 Chongming District Conservation area MG673535  
  1. AEFV Aedes flavivirus, CxFV Culex flavivirus, QBV Quang Binh virus, NS5 Non-structural 5 gene, E Envelope gene