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Table 1 Sequencing and mapping summary of 6 isolates of Plasmodium falciparum from China-Myanmar border area

From: Whole-genome sequencing and analysis of Plasmodium falciparum isolates from China-Myanmar border area

Samples

Pf7

Pf54

Pf87

Pf237

Pf289

Pf297

Sequencing and mapping

 Number of clean reads

101 315 479

140 050 984

248 893 994

78 515 613

80 809 032

94 593 018

 Mapped on P. falciparum

5 430 602

6 342 044

10 150 675

21 265 252

10 626 161

5 929 181

 Mapped (%)

5.36

4.53

4.08

27.08

13.15

6.27

 Mean mapping quality

47.37

46.59

46.07

53.2

51.98

48.88

Coverage

 Coverage fold

20.57

22.76

35.50

121.78

54.68

23.98

 Genome covered > 1 (%)

96.43

96.05

96.96

98.61

98.04

96.10

Variation

 Raw SNP

53 314

50 032

58 753

83 456

70 415

53 730

 Filtered SNP

11 838

10 928

606

15 410

14 361

1230

 Filtered Indel

15 657

11 474

3094

32 402

27 814

8953

  1. SNP single nucleotide polymorphism, Indel insertion-deletion