TY - JOUR AU - Gorbalenya, A. AU - Enjuanes, L. AU - Ziebuhr, J. AU - Snijder, E. PY - 2006 DA - 2006// TI - Nidovirales: evolving the largest RNA virus genome JO - Virus Res VL - 117 UR - https://doi.org/10.1016/j.virusres.2006.01.017 DO - 10.1016/j.virusres.2006.01.017 ID - Gorbalenya2006 ER - TY - JOUR AU - Corman, V. AU - Muth, D. AU - Niemeyer, D. AU - Drosten, C. PY - 2018 DA - 2018// TI - Hosts and sources of endemic human coronaviruses JO - Adv Virus Res VL - 100 UR - https://doi.org/10.1016/bs.aivir.2018.01.001 DO - 10.1016/bs.aivir.2018.01.001 ID - Corman2018 ER - TY - JOUR AU - Cui, J. AU - Li, F. AU - Shi, Z. L. PY - 2019 DA - 2019// TI - Origin and evolution of pathogenic coronaviruses JO - Nat Rev Microbiol VL - 17 UR - https://doi.org/10.1038/s41579-018-0118-9 DO - 10.1038/s41579-018-0118-9 ID - Cui2019 ER - TY - STD TI - Zhu N, Zhang D, Wang W, Li X, Yang B, Song J, et al. A novel coronavirus from patients with pneumonia in China, 2019. N Engl J Med. 2020. https://doi.org/10.1056/NEJMoa2001017. ID - ref4 ER - TY - STD TI - Wu F, Zhao S, Yu B, Chen Y, Wang W, Song Z, et al. A new coronavirus associated with human respiratory disease in China. Nature. 2020. https://doi.org/10.1038/s41586-020-2008-3. ID - ref5 ER - TY - STD TI - Zhou P, Yang X, Wang X, Hu B, Zhang L, Zhang W, et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature. 2020. https://doi.org/10.1038/s41586-020-2012-7. ID - ref6 ER - TY - JOUR AU - Adams, M. AU - Carstens, E. PY - 2012 DA - 2012// TI - Ratification vote on taxonomic proposals to the international committee on taxonomy of viruses JO - Arch Virol VL - 157 UR - https://doi.org/10.1007/s00705-012-1299-6 DO - 10.1007/s00705-012-1299-6 ID - Adams2012 ER - TY - JOUR AU - Menachery, V. AU - Yount, B. AU - Debbink, K. AU - Agnihothram, S. AU - Gralinski, L. AU - Plante, J. PY - 2015 DA - 2015// TI - A SARS-like cluster of circulating bat coronaviruses shows potential for human emergence JO - Nat Med VL - 21 UR - https://doi.org/10.1038/nm.3985 DO - 10.1038/nm.3985 ID - Menachery2015 ER - TY - JOUR AU - Qiang, X. L. AU - Kou, Z. PY - 2019 DA - 2019// TI - Scoring amino acid mutation to predict pandemic risk of avian influenza virus JO - BMC Bioinformatics VL - 20 UR - https://doi.org/10.1186/s12859-019-2770-0 DO - 10.1186/s12859-019-2770-0 ID - Qiang2019 ER - TY - JOUR AU - Qiang, X. L. AU - Kou, Z. AU - Fang, G. AU - Wang, Y. PY - 2018 DA - 2018// TI - Scoring amino acid mutations to predict avian-to-human transmission of avian influenza viruses JO - Molecules VL - 23 UR - https://doi.org/10.3390/molecules23071584 DO - 10.3390/molecules23071584 ID - Qiang2018 ER - TY - JOUR AU - Heald-Sargent, T. AU - Gallagher, T. PY - 2012 DA - 2012// TI - Ready, set, fuse! The coronavirus spike protein and acquisition of fusion competence JO - Viruses. VL - 4 UR - https://doi.org/10.3390/v4040557 DO - 10.3390/v4040557 ID - Heald-Sargent2012 ER - TY - JOUR AU - Zhao, W. M. AU - Song, S. H. AU - Chen, M. L. AU - Zou, D. AU - Ma, L. N. AU - Ma, Y. K. PY - 2020 DA - 2020// TI - The 2019 novel coronavirus resource JO - Yi Chuan VL - 42 ID - Zhao2020 ER - TY - JOUR AU - Liu, B. AU - Liu, F. AU - Wang, X. AU - Chen, J. AU - Fang, L. AU - Chou, K. PY - 2015 DA - 2015// TI - Pse-in-one: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences JO - Nucleic Acids Res VL - 43 UR - https://doi.org/10.1093/nar/gkv458 DO - 10.1093/nar/gkv458 ID - Liu2015 ER - TY - JOUR AU - Atchley, W. R. AU - Zhao, J. AU - Fernandes, A. D. AU - Drüke, T. PY - 2005 DA - 2005// TI - Solving the protein sequence metric problem JO - Proc Natl Acad Sci U S A VL - 102 UR - https://doi.org/10.1073/pnas.0408677102 DO - 10.1073/pnas.0408677102 ID - Atchley2005 ER - TY - JOUR AU - Liaw, A. AU - Wiener, M. PY - 2002 DA - 2002// TI - Classification and regression by random Forest JO - R News VL - 2 ID - Liaw2002 ER - TY - JOUR AU - Sing, T. AU - Sander, O. AU - Beerenwinkel, N. AU - Lengauer, T. PY - 2005 DA - 2005// TI - ROCR: visualizing classifier performance in R JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti623 DO - 10.1093/bioinformatics/bti623 ID - Sing2005 ER - TY - STD TI - Guan WJ, Ni ZY, Hu Y, Liang WH, Ou CQ, He JX, et al. Clinical characteristics of coronavirus disease 2019 in China. N Engl J Med. 2020. https://doi.org/10.1056/NEJMoa2002032. ID - ref17 ER - TY - JOUR AU - Holshue, M. L. AU - DeBolt, C. AU - Lindquist, S. AU - Lofy, K. H. AU - Wiesman, J. AU - Bruce, H. PY - 2020 DA - 2020// TI - First case of 2019 novel coronavirus in the United States JO - N Engl J Med VL - 382 UR - https://doi.org/10.1056/NEJMoa2001191 DO - 10.1056/NEJMoa2001191 ID - Holshue2020 ER - TY - STD TI - Letko M, Marzi A, Munster V. Functional assessment of cell entry and receptor usage for SARS-CoV-2 and other lineage B betacoronaviruses. Nat Microbiol. 2020. https://doi.org/10.1038/s41564-020-0688-y. ID - ref19 ER - TY - STD TI - Wrapp D, Wang N, Corbett K, Goldsmith J, Hsieh C, Abiona O, et al. Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation. Science. 2020. https://doi.org/10.1126/science.abb2507. ID - ref20 ER -