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Fig. 2 | Infectious Diseases of Poverty

Fig. 2

From: Public health implications of Yersinia enterocolitica investigation: an ecological modeling and molecular epidemiology study

Fig. 2

SNP-based maximum likelihood (ML) trees of Yersinia spp. isolates. a The SNP-based ML tree was built from a recombination-filtered alignment of the whole genome SNP (wgSNP) present in 270 isolates. The ML tree was built using the GTR + F + ASC + G4 model, with 1000 bootstraps based on 1,563,073 SNPs, with Y. enterocolitica 8081 (GCA_000009345.1) was used as the reference sequence. b The cgSNP-based ML tree was built from 187 Y. enterocolitica isolates of this study and 88 public data. Y. enterocolitica 8081 (GCA_000009345.1) was used as the reference sequence. Y. pseudotuberculosis (GCA_900637475.1) was used as outgroups

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Infectious Diseases of Poverty

ISSN: 2049-9957

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