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Table 1 Summary of the flaviviruses detected from mosquito and avian samples, obtained in Chongming Island, Shanghai in 2021

From: Long-distance spread of Tembusu virus, and its dispersal in local mosquitoes and domestic poultry in Chongming Island, China

Strain

Virus

Vector/ Host

Collection date

Inhabitant

GenBank ID

NS5

E

Whole genome

Mosquito

       

21-9-DY-CXT-5

TMUV

Culex tritaeniorhynchus

Sep-21

Poultry farma

OP087424

OP104342

 

21-9-DY-CXT-9

TMUV

Cx. tritaeniorhynchus

Sep-21

Poultry farma

OP087425

  

21-6-NF1-CXT-1

CHAOV

Cx. tritaeniorhynchus

Jun-21

Buffalo farma

OP087426

  

21-7-SY-CXT-12

CHAOV

Cx. tritaeniorhynchus

Jul-21

Cow farma

OP087427

  

21-7-NF1-CXT-1

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087428

  

21-7-NF1-CXT-2-1

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087429

  

21-7-NF1-CXT-2-2

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087430

  

21-7-NF1-CXT-3

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087431

  

21-7-NF1-CXT-5

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087432

  

21-7-NF1-CXT-8

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087433

  

21-7-NF1-CXT-10-1

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087434

  

21-7-NF1-CXT-10-2

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087435

  

21-7-NF1-CXT-11

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087436

 

OP087418

21-7-NF1-CXT-13

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087437

  

21-7-NF1-CXT-14-1

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087438

  

21-7-NF1-CXT-14-2

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087439

  

21-7-NF1-CXT-15

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087440

  

21-7-NF1-CXT-16

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087441

  

21-7-NF1-CXT-18

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087442

 

OP087419

21-7-NF1-CXT-20

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087443

  

21-7-NF1-CXT-21

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087444

  

21-7-NF1-CXT-22

QBV

Cx. tritaeniorhynchus

Jul-21

Buffalo farma

OP087445

  

21-9-NF1-CXT-1

QBV

Cx. tritaeniorhynchus

Sep-21

Buffalo farma

OP087446

  

21-9-NF1-CXT-3

QBV

Cx. tritaeniorhynchus

Sep-21

Buffalo farma

OP087447

  

21-9-NF1-CXT-4

QBV

Cx. tritaeniorhynchus

Sep-21

Buffalo farma

OP087448

  

21-10-NF-CXT-1

QBV

Cx. tritaeniorhynchus

Oct-21

Buffalo farma

OP087449

  

21-7-SY-CXT-18

QBV

Cx. tritaeniorhynchus

Jul-21

Cow farma

OP087450

  

21-8-SY-CXT-1

QBV

Cx. tritaeniorhynchus

Aug-21

Cow farma

OP087451

  

21-8-SY-CXT-3

QBV

Cx. tritaeniorhynchus

Aug-21

Cow farma

OP087452

  

21-10-SY-CXT

QBV

Cx. tritaeniorhynchus

Oct-21

Cow farma

OP087453

  

21-9-DY-CXT-4-4

QBV

Cx. tritaeniorhynchus

Sep-21

Poultry farma

OP087454

  

21-9-DY-CXT-4-5

QBV

Cx. tritaeniorhynchus

Sep-21

Poultry farma

OP087455

  

21-9-DY-CXT-5-Q

QBV

Cx. tritaeniorhynchus

Sep-21

Poultry farma

OP087456

  

21-9-DY-CXT-6-3

QBV

Cx. tritaeniorhynchus

Sep-21

Poultry farma

OP087457

  

21-9-DY-CXT-6-5

QBV

Cx. tritaeniorhynchus

Sep-21

Poultry farma

OP087458

  

21-9-DY-CXT-8-3

QBV

Cx. tritaeniorhynchus

Sep-21

Poultry farma

OP087459

  

21-9-DY-CXT-12

QBV

Cx. tritaeniorhynchus

Sep-21

Poultry farma

OP087460

  

21-9-DY-CXT-19

QBV

Cx. tritaeniorhynchus

Sep-21

Poultry farma

OP087461

  

21-10-DY-CXT-1-1

QBV

Cx. tritaeniorhynchus

Oct-21

Poultry farma

OP087462

  

21-10-DY-CXT-1-2

QBV

Cx. tritaeniorhynchus

Oct-21

Poultry farma

OP087463

  

21-10-DY-CXT-1-3

QBV

Cx. tritaeniorhynchus

Oct-21

Poultry farma

OP087464

  

21-10-DY-CXT-2

QBV

Cx. tritaeniorhynchus

Oct-21

Poultry farma

OP087465

  

21-10-DY-CXT-3

QBV

Cx. tritaeniorhynchus

Oct-21

Poultry farma

OP087466

  

21-10-DY-CXT-5

QBV

Cx. tritaeniorhynchus

Oct-21

Poultry farma

OP087467

  

21-7-AS-CXT-2

QBV

Cx. tritaeniorhynchus

Jul-21

Cow farmb

OP087468

  

21-7-YJ-CXT-2

QBV

Cx. tritaeniorhynchus

Jul-21

Cow farmc

OP087469

  

21-7-YJ-CXT-5

QBV

Cx. tritaeniorhynchus

Jul-21

Cow farmc

OP087470

  

21-9-YJ-CXT-1

QBV

Cx. tritaeniorhynchus

Sep-21

Cow farmc

OP087471

  

21-9-YY-CXT-2

QBV

Cx. tritaeniorhynchus

Sep-21

Chicken farmc

OP087472

  

21-9-YY-CXT-3

QBV

Cx. tritaeniorhynchus

Sep-21

Chicken farmc

OP087473

 

OP087420

21-10-NF-AEX

QBV

Aedes vexans

Oct-21

Buffalo farma

OP087474

  

Avian

       

21-5-GY-8

TMUV

Chicken

May-21

Poultry farma

OP087475

OP104343

OP087421

21-5-GY-20

TMUV

Chicken

May-21

Poultry farma

OP087476

  

21-5-DY-11

TMUV

Chicken

May-21

Poultry farma

OP087477

  

21-5-DY-7

TMUV

Chicken

May-21

Poultry farma

OP087478

  

DT2-G

TMUV

Goose

Dec-21

Poultry farma

OP087479

  

bird_G10

TMUV

Migratory Bird

Dec-21

Nature Reservea

OP087480

  

DT2-ChickSerum36

QBV

Chicken

Dec-21

Poultry farma

OP087481

  

DT1-DuckSerum5

QBV

Duck

Nov-21

Poultry farma

OP087482

  

DT1-DuckSerum7

QBV

Duck

Nov-21

Poultry farma

OP087483

  

bird_Y6

QBV

Migratory Bird

Dec-21

Nature Reservea

OP087484

  
  1. Poultry: mixed flocks of adult chickens and ducks, a: Eastern Chongming Island; b: Central Chongming Island; c: Western Chongming Island