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Table 2 Potential pathogens presented by high-throughput sequencing

From: Identification of tick-borne pathogen diversity by metagenomic analysis in Haemaphysalis longicornis from Xinyang, China

Species Superkingdom Total lengtha Total numberb
Anaplasma bovis Prokaryota 38 461 157
Anaplasma ovis Prokaryota 21 710 85
Anaplasma phagocytophilum Prokaryota 2123 12
Babesia bigemina Eukaryota 2225 19
Babesia bovis Eukaryota 1188 15
Babesia canis Eukaryota 22 734 199
Babesia cf. divergens Eukaryota 2808 20
Babesia divergens Eukaryota 24 651 95
Babesia felis Eukaryota 4036 16
Babesia gibsoni Eukaryota 15 349 69
Babesia microti Eukaryota 29 114 307
Babesia occultans Eukaryota 31 359 233
Babesia odocoilei Eukaryota 14 817 155
Babesia ovata Eukaryota 4636 22
Babesia rossi Eukaryota 2239 22
Babesia sp. 28 Eukaryota 8543 71
Babesia sp. 4 NAN-2012 Eukaryota 2 054 498 12 132
Babesia sp. giraffe 1505 Eukaryota 8671 37
Babesia sp. Kh-Hj143 Eukaryota 68 397 241
Babesia sp. MA#230 Eukaryota 58 780 236
Babesia sp. MA#361–2 Eukaryota 56 703 252
Babesia sp. NJ5 Eukaryota 3230 21
Babesia sp. NV-1 Eukaryota 4606 34
Babesia sp. RWF-2013 Eukaryota 15 721 80
Babesia sp. sable antelope/2005 Eukaryota 8071 33
Babesia sp. SAP#091 Eukaryota 497 797 1919
Babesia sp. SAP#131 Eukaryota 177 543 813
Babesia sp. UR1 Eukaryota 5355 34
Babesia sp. ‘venatorum’ Eukaryota 9688 59
Babesia sp. YZ-2012 Eukaryota 3 803 579 15 839
Coxiella burnetii Prokaryota 3 480 573 13 807
Rickettsia australis Prokaryota 25 868 93
Rickettsia conorii Prokaryota 9580 45
Rickettsia heilongjiangensis Prokaryota 628 174 2387
Rickettsia heilongjiangii Prokaryota 42 045 189
Rickettsia japonica Prokaryota 5718 23
Rickettsia prowazekii Prokaryota 5166 26
Rickettsia rhipicephali Prokaryota 3309 14
Rickettsia rickettsii Prokaryota 376 004 1519
Rickettsia slovaca Prokaryota 2357 16
Rickettsia sp. BJ-90 Prokaryota 9265 38
Rickettsia sp. MSeoKT1 Prokaryota 2799 18
Rickettsia sp. T170-B Prokaryota 1 056 955 4112
Rickettsiella grylli Prokaryota 15 798 91
Severe fever with thrombocytopenia syndrome virus Viruses 1420 5
  1. aTotal length: Sum of the reads that classified with the corresponding species
  2. bTotal number: Number of reads that classified with the corresponding species