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Table 2 Potential pathogens presented by high-throughput sequencing

From: Identification of tick-borne pathogen diversity by metagenomic analysis in Haemaphysalis longicornis from Xinyang, China

Species

Superkingdom

Total lengtha

Total numberb

Anaplasma bovis

Prokaryota

38 461

157

Anaplasma ovis

Prokaryota

21 710

85

Anaplasma phagocytophilum

Prokaryota

2123

12

Babesia bigemina

Eukaryota

2225

19

Babesia bovis

Eukaryota

1188

15

Babesia canis

Eukaryota

22 734

199

Babesia cf. divergens

Eukaryota

2808

20

Babesia divergens

Eukaryota

24 651

95

Babesia felis

Eukaryota

4036

16

Babesia gibsoni

Eukaryota

15 349

69

Babesia microti

Eukaryota

29 114

307

Babesia occultans

Eukaryota

31 359

233

Babesia odocoilei

Eukaryota

14 817

155

Babesia ovata

Eukaryota

4636

22

Babesia rossi

Eukaryota

2239

22

Babesia sp. 28

Eukaryota

8543

71

Babesia sp. 4 NAN-2012

Eukaryota

2 054 498

12 132

Babesia sp. giraffe 1505

Eukaryota

8671

37

Babesia sp. Kh-Hj143

Eukaryota

68 397

241

Babesia sp. MA#230

Eukaryota

58 780

236

Babesia sp. MA#361–2

Eukaryota

56 703

252

Babesia sp. NJ5

Eukaryota

3230

21

Babesia sp. NV-1

Eukaryota

4606

34

Babesia sp. RWF-2013

Eukaryota

15 721

80

Babesia sp. sable antelope/2005

Eukaryota

8071

33

Babesia sp. SAP#091

Eukaryota

497 797

1919

Babesia sp. SAP#131

Eukaryota

177 543

813

Babesia sp. UR1

Eukaryota

5355

34

Babesia sp. ‘venatorum’

Eukaryota

9688

59

Babesia sp. YZ-2012

Eukaryota

3 803 579

15 839

Coxiella burnetii

Prokaryota

3 480 573

13 807

Rickettsia australis

Prokaryota

25 868

93

Rickettsia conorii

Prokaryota

9580

45

Rickettsia heilongjiangensis

Prokaryota

628 174

2387

Rickettsia heilongjiangii

Prokaryota

42 045

189

Rickettsia japonica

Prokaryota

5718

23

Rickettsia prowazekii

Prokaryota

5166

26

Rickettsia rhipicephali

Prokaryota

3309

14

Rickettsia rickettsii

Prokaryota

376 004

1519

Rickettsia slovaca

Prokaryota

2357

16

Rickettsia sp. BJ-90

Prokaryota

9265

38

Rickettsia sp. MSeoKT1

Prokaryota

2799

18

Rickettsia sp. T170-B

Prokaryota

1 056 955

4112

Rickettsiella grylli

Prokaryota

15 798

91

Severe fever with thrombocytopenia syndrome virus

Viruses

1420

5

  1. aTotal length: Sum of the reads that classified with the corresponding species
  2. bTotal number: Number of reads that classified with the corresponding species