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Table 1 Primer sequences and PCR conditions for pfhrp2 and pfldh genes amplification

From: Prevalence of Plasmodium falciparum isolates lacking the histidine rich protein 2 gene among symptomatic malaria patients in Kwilu Province of the Democratic Republic of Congo

Targeted gene

Primer sequence (5′ → 3′)

Reaction component

Cycling condition

LOD

(ng/µl)

pfhrp2 Exon 1–2, PF3D7_0831800

Outer

For: GGTTTCCTTCTCAAAAAATAAAG

Rev: TCTACATGTGCTTGAGTTTCG

One Taq 2 × Master Mix with standard buffer: 12.5 µl

10 µmol/L forward primer: 1 µl

10 µmol/L reverse primer: 1 µl

Nuclease free water: 7.5 µl

DNA template: 3 µl (gDNA or 5 × diluted outer PCR product

25 µl reaction volume

95 °C/5 min;

40 cycles of 95 °C/30 s, 55 °C/30 s, 68 °C/30 s

68 °C/5 min

4 °C–∞

10–5

Inner

For: GTATTATCCGCTGCCGTTTTTGCC

Rev: CTACACAAGTTATTATTAAATGCGGAA

95 °C/5 min;

40 cycles of 95 °C/30 s, 62 °C/30 s, 68 °C/30 s

68 °C/5 min

4 °C–∞

pfldh (qPCR)

For: ACGATTTGGCTGGAGCAG

Rev: GGAACACCTGAATGTTGATG

PowerUp™ SYBR ™ Green Master Mix (2 ×): 12.5 µl

10 µmol/L forward primer: 0.5 µl

10 µmol/L reverse primer: 0.5 µl

Nuclease free water: 6.5 µl

DNA template: 2–4 µl

22–24 µl reaction volume

50 °C/2 min;

95 °C/2 min

45 cycles of 95 °C/15 s, 62 °C/1 min, 95 °C/30 s, 60 °C/15 s

10–4

  1. LOD Lower limit of detection, qPCR Quantitative or real-time PCR